Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18354027|gb|BJ186082.1|BJ186082EST: ATTGTATTTGTGTTTTTATTCTCTATCTTG GTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
genomic: ATTGTATTTGTGTTTTTATTCTCTATCTTGgtgagttgaa ... gattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
EST:
gi|18355403|gb|BJ187462.1|BJ187462EST: ATTGTATTTGTGTTTTTATTCTCTATCTTG GTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
genomic: ATTGTATTTGTGTTTTTATTCTCTATCTTGgtgagttgaa ... gattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
EST:
gi|18348321|gb|BJ180368.1|BJ180368EST: ATTGTATTTGTGTTTTTATTCTCTATCTTG GTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
genomic: ATTGTATTTGTGTTTTTATTCTCTATCTTGgtgagttgaa ... gattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
EST:
gi|18363135|gb|BJ195207.1|BJ195207EST: TCAGACTTCTGTTATCGGCAATTGTATTTGTGTTTTTATTCTCTATCTTG GTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
genomic: TCAGACTTCTGTTATCGGCAATTGTATTTGTGTTTTTATTCTCTATCTTGgtgagttgaa ... gattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctggagcatgtcaaaagtggaactaaccttcttccggtgttctctgattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAATGGAGCAAATGTGTATACCGCTAATGAGTGTGAAGGAGTTGTGGAGGCG
ttctctg CT-rich tract
attgtaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
caagtggagataggaacgtagtttaccttagaaccgagactacatctggagcatgtcaaaagtggaactaaccttcttccggtgttctctgattgtaaagGTAGGACTATCGGCAATTGGCACCGGAAATGAGATGTAGCGATTGTCTCAATGGAGCAAATGTGTATACCGCTAATGAGTGTGAAGGAGTTGTGGAGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG