1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
GGTGGAAAATTTGCGAGTGGTTTTGACTGACGGTGCCTCGCATGCTGTAGACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgtagatccgctgagttttatacttttcatatattttgtgtgtggagttctgaagtcacaccaacctctgcaggacgtttatccaaagctcccttttaaaataacaacatgatagtaactcagtggaacactttttaaaatcgtgatgaagttaacaggatttgttgatctgtgtgctccag
species | Physcomitrella patens |
transcript | PP1S100_33V6.1 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAG TGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAGEST: gi|18339957|gb|BJ171985.1|BJ171985
genomic: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgt ... tgtgctccagTGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAG
EST: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAG TGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAGEST: gi|208367792|gb|DC944038.1|DC944038
genomic: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgt ... tgtgctccagTGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAG
EST: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAG TGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAGEST: gi|37825957|gb|BJ584023.1|BJ584023
genomic: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgt ... tgtgctccagTGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAG
EST: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAG TGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAG
genomic: ACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgt ... tgtgctccagTGTTATGCGGCAGCAAGGCCTGTTATTTTGGAACCGGTAATGCTTGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTGGAAAATTTGCGAGTGGTTTTGACTGACGGTGCCTCGCATGCTGTAGACTCTAGTGAACTTGCTTTCAAGCTGGCTGCTCTGTATGCGTTCCGTCAGgtgcagttgtagatccgctgagttttatacttttcatatattttgtgtgtggagttctgaagtcacaccaacctctgcaggacgtttatccaaagctcccttttaaaataacaacatgatagtaactcagtggaacactttttaaaatcgtgatgaagttaacaggatttgttgatctgtgtgctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT