1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtttaaaaggcattggtttgtagtctgaacgatctcattctcttttctgacttcaactgtttgtgcatcctgataatgtagtgcgatgataatatctagtgaatgttctatctcctttctatatgcctttcttaagtgatgaattccgaaagtggtatgttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATAGTGTTACCCATAAACTTTCAGGGCTGAAGAGTGCTGAGCTTTCTGGAC
species | Physcomitrella patens |
transcript | PP1S100_253V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37849973|gb|BJ607981.1|BJ607981
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: GGACCAGCCTCAACCACGAAGCTTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|208371345|gb|DC944509.1|DC944509
genomic: GGACCAGCCTCAACCACGAAGC-TTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|67726041|gb|BJ976300.1|BJ976300
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37835294|gb|BJ593306.1|BJ593306
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37835268|gb|BJ593280.1|BJ593280
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: GGACCAGCCTCAACCCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|208381405|gb|DC927841.1|DC927841
genomic: GGACCAGCCTCAA-CCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37834306|gb|BJ592318.1|BJ592318
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: GCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|208382869|gb|DC928294.1|DC928294
genomic: GCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|208388293|gb|DC945597.1|DC945597
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37832721|gb|BJ590733.1|BJ590733
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37831521|gb|BJ589533.1|BJ589533
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: GGACCAGCCTCAACCACGAAGCTTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37827134|gb|BJ585146.1|BJ585146
genomic: GGACCAGCCTCAACCACGAAGC-TTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|208381561|gb|DC923147.1|DC923147
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: AGGACCAGCCTCAACCACGGAGCTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATEST: gi|37846972|gb|BJ604980.1|BJ604980
genomic: AGGACCAGCCTCAACCACGAAGCTTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
EST: ACCAGCCTCAACCCACGAAGGCTTTGCACACGTCAGTGAGGATTTCTAAT CCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
genomic: ACCAGCCTCAA-CCACGAA-GC-TTGCACACGTCAGTGAGGATTTCTAATgtaagtttaa ... ttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGAT
ctttctatatgcctttcttaagtgatgaattccgaaagtggtatgttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATAGTGTTACCCATAAACTTTCAGGGCTGAAGAGTGCTGAGCTTTCTGGAC
tgttgat putative branch site (score: 3)
tttcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttaaaaggcattggtttgtagtctgaacgatctcattctcttttctgacttcaactgtttgtgcatcctgataatgtagtgcgatgataatatctagtgaatgttctatctcctttctatatgcctttcttaagtgatgaattccgaaagtggtatgttgattgcagCCTGCAGGAGGCCGCAGTCAGATTTCCTTCGGCACAGATGAGGAGGTTGATAGTGTTACCCATAAACTTTCAGGGCTGAAGAGTGCTGAGCTTTCTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT