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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGCACAGGCGGGATGGTGGGAGGAGGAACGGAGGACCTGACGAGTTGGAGGATGGAGAACTTGGCGAGGATGGCGAGATTCAATAGACCCTACGTCAgtatgattgtgtattctcttgagcccctgctttagatctgctggttaaccaccatttggtggtcgaagagaggctgtaatgaactgttgcttgctccccc...

Basic information

species Physcomitrella patens
transcript PP1S100_246V6.1
intron # 2
splice site 5'
intron type U2

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGGCACAGGCGGGATGGTGGGAGGAGGAACGGAGGACCTGACGAGTTGGAGGATGGAGAACTTGGCGAGGATGGCGAGATTCAATAGACCCTACGTCAgtatgattgtgtattctcttgagcccctgctttagatctgctggttaaccaccatttggtggtcgaagagaggctgtaatgaactgttgcttgctccccc

- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGATG