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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttagcaatcactcaattttggactttggggtcgaatacatcttagctaccatggtaagagttacaagatgctgatcaacagtacgcttgtgcaggaagGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTAGCGCTCCTGGGTGCTGTAAGCCATGCCGAAGGATTCGTCTCATTCAATT

Basic information

species Physcomitrella patens
transcript PP1S100_231V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37838912|gb|BJ596920.1|BJ596920
EST:     TCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTG                         GTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTA
genomic: TCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTGgtaagaatct ... gtgcaggaagGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTA
EST: gi|18361022|gb|BJ193086.1|BJ193086
EST:     CTCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTG                         GTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTA
genomic: CTCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTGgtaagaatct ... gtgcaggaagGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctaccatggtaagagttacaagatgctgatcaacagtacgcttgtgcaggaagGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTAGCGCTCCTGGGTGCTGTAAGCCATGCCGAAGGATTCGTCTCATTCAATT
                         tgctgat  putative branch site (score: 3)