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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgattttagcaatcactcaattttggactttggggtcgaatacatcttagctaccatggtaagagttacaagatgctgatcaacagtacgcttgtgcagGAAGGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTAGCGCTCCTGGGTGCTGTAAGCCATGCCGAAGGATTCGTCTCATTC

Basic information

species Physcomitrella patens
transcript PP1S100_231V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18361022|gb|BJ193086.1|BJ193086
EST:     CTCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGT-                         ---GGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTT
genomic: CTCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTGgtaagaatct ... gcttgtgcagGAAGGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTT
EST: gi|37838912|gb|BJ596920.1|BJ596920
EST:     TCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGT-                         ---GGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTT
genomic: TCCCCGTCGCCATCTGCATCCTTGACCTCACGCAGATCCGGTGCTTGTGgtaagaatct ... gcttgtgcagGAAGGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttagctaccatggtaagagttacaagatgctgatcaacagtacgcttgtgcagGAAGGTTCAGATGGATTCCTATCGCCATTTGTCAGTTTCCCTTTTGGTTTTGTTAGCGCTCCTGGGTGCTGTAAGCCATGCCGAAGGATTCGTCTCATTC
                             tgctgat  putative branch site (score: 3)