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GTTACATGCCAGGTGATCTCTACAATTTGAACTCAGCCTATGGAGGATCGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttcttggaactgatcatttgcattcattttattcacagtcgtggtgcaactacatcgtaggcttccactgatgatctttttcttccattcttctactcggatgaggaaggttgcacttgcttaaatttatttaggtctctcacaacaaactttcttgctgtag
species | Physcomitrella patens |
transcript | PP1S100_191V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162164680|gb|FC340727.1|FC340727
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162245206|gb|FC422135.1|FC422135
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162150325|gb|FC326597.1|FC326597
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162198198|gb|FC372589.1|FC372589
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162166456|gb|FC342438.1|FC342438
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT TEST: gi|162166456|gb|FC342438.1|FC342438
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtag-
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT TEST: gi|162254706|gb|FC430995.1|FC430995
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtag-
EST: CGGAGGAGCTGATACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCAEST: gi|162171142|gb|FC347756.1|FC347756
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
EST: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTT GTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
genomic: CGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttct ... cttgctgtagGTTCTTGGAGATGTAGTCCTCAATCACCGTTGCGCTCAAAAACAGAGTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACATGCCAGGTGATCTCTACAATTTGAACTCAGCCTATGGAGGATCGGAGGAGCTGAAACAGTGTATAGACGAGATGCATAAGCATAACATCCTTgtaactttcttggaactgatcatttgcattcattttattcacagtcgtggtgcaactacatcgtaggcttccactgatgatctttttcttccattcttctactcggatgaggaaggttgcacttgcttaaatttatttaggtctctcacaacaaactttcttgctgtag
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG