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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaatctctttcgcactccgtttgtttcgatggttctgtggtttaactgaacaaggaacaacctgaggccggatgaatggaagcggaactataaagggtatagatggatttatatgtggaattttgggttgattgcagAAATGTGTACAAAGTTTGACATAAGCATATTTCAAGGGCCGGGAAGCCCGTTGCCGAACGGCATACCAACATTTAGTGTTCAGATCTTCAACCTATGCAC

Basic information

species Physcomitrella patens
transcript PP1S100_188V6.1
intron # 2
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cggaactataaagggtatagatggatttatatgtggaattttgggttgattgcagAAATGTGTACAAAGTTTGACATAAGCATATTTCAAGGGCCGGGAAGCCCGTTGCCGAACGGCATACCAACATTTAGTGTTCAGATCTTCAACCTATGCAC
                                           ggttgat  putative branch site (score: 5)
                        atttatatgt  TA-rich tract