Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162170514|gb|FC347660.1|FC347660EST: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAG GCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
genomic: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAGgtgcgcccct ... ttatttgcagGCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
EST:
gi|162149801|gb|FC325916.1|FC325916EST: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAG GCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
genomic: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAGgtgcgcccct ... ttatttgcagGCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
EST:
gi|162244985|gb|FC424943.1|FC424943EST: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAG GCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
genomic: CATTGGAGAGTTTGCTTACAGCCACCACGACATACGCATCCCTGAACGAGgtgcgcccct ... ttatttgcagGCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcatgattttcttgtgacacgaactcacacactgctttttactctttatttgcagGCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCTTGCGAAGATACATTGACAACGTCCGACAAGGTAAGGGCCAGACACGTAA
aactcac putative branch site (score: 2)
ctttttactctttatt putative PPT
tttttactctttattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgcgcccctttcttgttccttcgcatgcatagatcatgattttcttgtgacacgaactcacacactgctttttactctttatttgcagGCCAGATATACTCTGTCAATGAAGCTAAGTACTTCGCCTGGCCAGTGGGCTTGCGAAGATACATTGACAACGTCCGACAAGGTAAGGGCCAGACACGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA