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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaggtgagtcataaaacaatcttgtgatgtgaggattggaataccatacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG

Basic information

species Physcomitrella patens
transcript PP1S100_137V6.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S100_137V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: GLYMA19G40030.1 (Glycine max), 3'ss of exon 4
------------------aaggtgagtcataaaacaatcttgtgatgtgaggattggaatacca-----tacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG
                  | | |      |       | |||| |||| | |  |  ||| |       |||  |   | |||  |  ||  |||   |||  || ||||  | |||   ||||| || ||  |       || |||   ||||||||||||||||| ||||||||||| ||  | |  | ||  ||  | |||    |||| | |       
gttagtcttctcttcctaatgctttcatttcttttgtttttgtcatgttatgcataaaatgcatatggctactgagaaagcaaggtaaatattgttattgttagt-tgtggtttttg---cagGTGGGAGATGCTGTGAAGGACCACGCTTGCTGGGAGAGACCCGAGGACATGGACACCCCAAGGAGTGTCTTTAAAGTAGATAAAAACAACCTG-------

upper sequence: PP1S100_137V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 3'ss of exon 2
aaggtgagtcataaaacaatcttgtgatgtgaggattggaataccatacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG
       ||  |  |     ||    ||       | | || |  | |   |  |      |   |  | |||  |    ||  | ||||        |||| ||||| || ||    || ||    || ||||||||||| |||||||||||||||||  |||  |  |  ||  ||||     ||||||| || ||||
-------gttttttactttgctctaaattctctcctcgaaaaaaaaaaacaagactttggga--aacagagtggtttaacgttagcgtgttca----tagGTTGGTGATCCTAACATGGACCATGCTTGTTGGGAGAGACCAGAAGACATGGACACACCAAGAAGTGTGTTTAAAGTCGACAAGAACAATCCTGGTTCTG

upper sequence: PP1S100_137V6.1 (Physcomitrella patens), 3'ss of exon 2
lower sequence: Vv02s0025g02650.t01 (Vitis vinifera), 3'ss of exon 2
aaggtgagtcataaaacaatcttgtgatgtgaggattggaataccatacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG
   |||||  | ||| || | |  |  |           | || |||  ||  ||||||  || ||   |      || | |       |  ||   ||||| || || || ||    || ||  | ||||||||||| || |||||||||||||||||||| |  | ||||||| |   |    | || || ||||| |
---gtgagcaacaaagcattatcatagtt----------agtatcatggat--tcaacagaattgaaaataacaaggtattta-----atgatggttcagGTGGGAGATCCAAACATGGACCATAAGTGCTGGGAGAGGCCTGAAGACATGGACACACCGCGCAATGTCTACAAGGTGTCTAAACAAAACCCAGGATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atacataatcaacaacatcgatggtgtgtgtgtgtgtgtgtgtgtcttgagccagGTCGGTGAACCGAATGCCGATCACCAATGCTGGGAGAGACCCGAAGACATGGACACACCGCGAACGGCCTACAAGATCGATTCCGACAATCCGGGATCTG
     taatcaa  TA-rich tract