Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18362192|gb|BJ194261.1|BJ194261EST: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAG GTGTTCCAGGAGCACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGA
genomic: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgt ... ggtgttccagG------AG---CACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGA
EST:
gi|18374488|gb|BJ206066.1|BJ206066EST: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAG GTGTTCCAGGAGCACGAGTCATCGGTGAACAGCATCAGCTGGGCT
genomic: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgt ... ggtgttccagG------AG---CACGAGTCATCGGTGAACAGCATCAGCTGGGCT
EST:
gi|18346898|gb|BJ178943.1|BJ178943EST: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAG GTGTTCCAGGAGCACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGAA
genomic: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgt ... ggtgttccagG------AG---CACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGAA
EST:
gi|67508028|gb|BJ940901.1|BJ940901EST: GTGGCATCAGGCTCANGT
genomic: GTGGCATCAGGCTCA-G-
EST:
gi|67508028|gb|BJ940901.1|BJ940901EST: GTGGCATCAGGCTCANGT
genomic: GTGGCATCAGGCTCA-G-
EST:
gi|18329551|gb|BJ161557.1|BJ161557EST: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAG GTGTTCCAGGAGCACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGAA
genomic: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgt ... ggtgttccagG------AG---CACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGAA
EST:
gi|18364252|gb|BJ196325.1|BJ196325EST: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAG GTGTTCCAGGAGCACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGA
genomic: AAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgt ... ggtgttccagG------AG---CACGAGTCATCGGTGAACAGCATCAGCTGGGCTCCTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCGCACCCCAAATTTGGTAACATTCTCGCGTCGTGCTCGTATGATCGCAAAGTCATCATCTGGAGAGAAGGGGCTGAGAATGAGTGGCATCAGGCTCAGgtagtcgcgtacccatctcttgcatttgcgttggatcactttttcctaccctttggaattttggatttgtggcagattttgaggtattcaaggggagagtatagaagtaggcagtggagagaagaattgggttgttgtctgaggtggataattcggtagcatggtcgcaggtgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA