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gttcgtcatttttcacttacgaacttgttttcttctcctgaatctttacagattgaattagactggctcacacacctttgtattggatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG
species | Physcomitrella patens |
transcript | PP1S100_117V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|18368349|gb|BJ200434.1|BJ200434
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|162221566|gb|FC397583.1|FC397583
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100425066|gb|BY976955.1|BY976955
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100441292|gb|BY962581.1|BY962581
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|208357262|gb|DC910659.1|DC910659
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100392297|gb|BY953293.1|BY953293
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|67574817|gb|BJ947641.1|BJ947641
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|162278567|gb|FC454029.1|FC454029
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|18357729|gb|BJ189788.1|BJ189788
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100360601|gb|BY984200.1|BY984200
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100432786|gb|BY978739.1|BY978739
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100437022|gb|BY979644.1|BY979644
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCEST: gi|100397347|gb|BY972453.1|BY972453
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
EST: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAG GGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
genomic: GAACTGTGTCAGGTGTGGCAGGACCTCTTGTCATTTTAGAGAAAGTCAAGgttcgtcatt ... gatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGC
aatctttacagattgaattagactggctcacacacctttgtattggatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG
ggctcac putative branch site (score: 18)
attgaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtcatttttcacttacgaacttgttttcttctcctgaatctttacagattgaattagactggctcacacacctttgtattggatttggcagGGGCCCAAATACCAGGAAATTGTGAATCTACGTTTGGGCGATGGAACACGCCGAAGGGGTCAGGTTCTGGAAGTGGATGGTGATCGAGCGGTTGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA