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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAGTTATGAAATCCCATTAACTTTTTGTGTACTAGCAATATCTCTACgtgcgattcgttaaaataggatctttttcctctgaaattcattgaatatttatcctccttttcttattctatattcaggttagtaagttaaactagatag...

Basic information

species Oryza sativa
transcript LOC_Osp1g00960.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Osp1g00960.1 (Oryza sativa), 5'ss of exon 1
lower sequence: GRMZM5G874448_T01 (Zea mays), 5'ss of exon 1
TCAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAGTTATGAAATCCCATTAACTTTTTGTGTACTAGCAATATCTCTACgtgcgattcgttaaaataggatctttttcctctgaaattcattgaatatttatcctccttttcttattctatattcaggttagtaagttaaactagatag
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TCAAATAATAAATATTCTTTTTCAGGCGGTCTACGAGCGGCTGCTCAATCTATTAGTTATGAAATACCATTAACTTTTTGTGTACTAGCAATATCTCTACgtgtgattcgttaaaataggatctttttcctctaaaatacattgaatgcttatcttcctttgcttattctgtattcgcgttggtaagttaaactcgatag

upper sequence: LOC_Osp1g00960.1 (Oryza sativa), 5'ss of exon 1
lower sequence: ATCG01100.1 (Arabidopsis thaliana), 5'ss of exon 1
TCAAATAATAAATATTCTTTTTCAGGTGGTCTACGAGCTGCCGCTCAATCTATTAGTTATGAAATCCCATTAACTTTTTGTGTACTAGCAATATCTCTACgtgcgattcgttaaaataggatctttttcctctgaaattc-attgaatatttatcctccttttcttattctatattcaggttagtaagttaaactagatag
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TCAAATAATAAATATTCTTTTTTAGGTGGTCTGCGAGCTGCTGCCCAATCGATTAGTTATGAAATACCATTAACTCTATGTGTTTTATCAATATCTCTACgtgcgattcgttgaaacagaaacgtttatttttactattccgtttcttctagacgaatcagttaaaaaacggaatatatatttatctttcgaattaatcg-