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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactcattatcttttccttccctaccaattaactgctccatgcgtgtatgttgtatgttagttgctgtagtctgatacaaaacatgcatgcccatctgttgctctccaatttttatagtttacactatcaaatttgttttgtgtcgttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC

Basic information

species Oryza sativa
transcript LOC_Os12g44310.2
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g44310.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G517495_T01 (Zea mays), 3'ss of exon 1
--------------------gtactcattatcttttccttccctaccaatta-actgctccatgcgtgtatgttgtatgttagtt--------gctgtagtctgat--acaaaacatgcatgcccatctgttgctctccaatttttatagtttacact--atcaaatttgttttgt-gtcgttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC
                    | |  |  |    || |      | ||| | | |     ||     ||| |  |  |   | |||        |||| |  || |   ||  |||||      |   || ||| | |   | ||| |  |||   | |   |   |   || ||||  | || | || |||||||||||||| ||||| || |||||||||||||||||||||||||  || || || |||||||| || |   | ||||| || |||||||||||    
gtactctttttcttggttctgcatccgcttatattgcacatattgccattcatagaaggcctaaaatgtctaatagacaatggttttgatgatgctgaaaactcaagaacccaacataagcctcttgctcttggtgtttcaatttgacggttgcaatttggttcgacacgtgttgttattgtggatgcagGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCTAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGC----

upper sequence: LOC_Os12g44310.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G376433_T01 (Zea mays), 3'ss of exon 2
--------------------gtactcattatcttttccttccctaccaatta-actgctccatgcgtgtatgttgtatgttagtt--------gctgtagtctgat--acaaaacatgcatgcccatctgttgctctccaatttttatagtttacact--atcaaatttgttttgt-gtcgttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC
                    | |  | ||     | |      | ||| | | |     ||     ||| |  |  |   | |||        |||| |  || |   ||  |||||      |   || ||| | |   | ||| |  |||   | |   |   |   || ||||  | || | || |||||||||||||| ||||| || |||||||||||||||||||||||||| || || || |||||||| || |   | || || || ||||||||||| |||
gtactctttttcttggctcggcatccctttatcctgcacatattgccattcatagaaggcctgaaatgtctaatagacaatggttttgatgatgctgaaaactcaagaacccaacatatgcctcttgctcttggtgtttcaatttgacggttgcaatttggttcgacacgtgttgttattgtggatgcagGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTCCCTTATGGATTCCATGCCTTC

upper sequence: LOC_Os12g44310.2 (Oryza sativa), 3'ss of exon 12
lower sequence: GRMZM2G057243_T02 (Zea mays), 3'ss of exon 11
---------------gtact-cattatcttttccttccc----taccaatta-actgctccatgcgtgtatgttgtatgttagtt--gctgtagtctgatac---aaaac---atgcatgcccat--ctgttgctctccaatttttatagtttacact--atcaaatttgttttgt-gtcgttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC
               |  || |||  |||| |||| | |    | ||| | | |     ||     ||| |  |  |   | |||  | ||  | |  | ||   | |||   |   |||||  |  || ||| | |   | ||| |  |||   | |   |       || ||||  | || | || |||||||||||||| ||||| || |||||||||||||||||||||||||| || || || |||||||| || |   | ||||| || ||||||||||| |||
gtactctttttcttggctctgcatcctcttatcctgcacatattgccattcatagaaggcctgaaatgtctaatagacaatggttttgatgatgccgaaaactcaagaacccaacatatgcctcttgctcttggtgtttcaatttgacggttgcaatttggttcggcacgtgttgttattgtggatgcagGAAATCTGAAGTAAATGTTATCGATGCAAAGACAATGTCTGCTGATCCAGTTGCGGTGGTTGAGCTTCCTAATAGGGTTCCTTATGGATTCCATGCCTTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86486795|gb|CI129428.1|CI129428
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|22306958|gb|BQ908180.1|BQ908180
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88258837|gb|CI359227.1|CI359227
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86483385|gb|CI126018.1|CI126018
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88848027|gb|CI086549.1|CI086549
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|18385444|gb|BM418643.1|BM418643
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|11171685|gb|AU163910.1|AU163910
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|13420729|gb|AU174819.1|AU174819
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88263686|gb|CI366587.1|CI366587
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATTTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|2801118|gb|AA754412.1|AA754412
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|38476035|gb|CF960168.1|CF960168
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86888957|gb|CI314573.1|CI314573
EST:     ATGGTTATTT-ATATTCTTT-TCCACGACGAGAATACAGG                         AAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCCGT
genomic: ATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|12622290|gb|AU172503.1|AU172503
EST:     GAAGAANATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88260587|gb|CI362880.1|CI362880
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAGTCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88994233|gb|CI116197.1|CI116197
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88466090|gb|CI519963.1|CI519963
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|22306955|gb|BQ908177.1|BQ908177
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86853546|gb|CI328024.1|CI328024
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|89184285|gb|CI046850.1|CI046850
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|29615255|gb|CB620267.1|CB620267
EST:     GAAGAAGATGATGGTTATTTGATATTCTCTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88968403|gb|CI098645.1|CI098645
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|29664595|gb|CB660870.1|CB660870
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|58594517|gb|CF992825.1|CF992825
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86878775|gb|CI340625.1|CI340625
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86903099|gb|CI324569.1|CI324569
EST:     GAAGAAAATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGCT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88845285|gb|CI084210.1|CI084210
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88413998|gb|CI530970.1|CI530970
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGGATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|8857129|gb|AU094447.1|AU094447
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATNTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86603140|gb|CI357504.1|CI357504
EST:     GGAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86598276|gb|CI354893.1|CI354893
EST:     GGAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86840533|gb|CI333828.1|CI333828
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|33381468|gb|CF196811.1|CF196811
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88255901|gb|CI354725.1|CI354725
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86877484|gb|CI312810.1|CI312810
EST:     GAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|18386993|gb|BM420191.1|BM420191
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTC-ATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86487964|gb|CI130597.1|CI130597
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88971972|gb|CI390555.1|CI390555
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGTT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86884860|gb|CI314436.1|CI314436
EST:     AAGAAGATGATGGTTAGTTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: AAGAAGATGATGGTTA-TTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|86593268|gb|CI257908.1|CI257908
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|89187575|gb|CI115021.1|CI115021
EST:     GAAGAAGATGATGGTTATTTGATATTCTTGGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|88253648|gb|CI352274.1|CI352274
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|29615508|gb|CB620520.1|CB620520
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGACCCGGT
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGT
EST: gi|1632281|gb|C20010.1|C20010
EST:     GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGG                         GAAATCTGAAGGTCAATGTGATTTNATGCAAAGACAATGTCTTGCTTATCC
genomic: GAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAG-TCAATGTGATTG-ATGCAAAGACAATGTCT-GCTGATCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 90

GATTCGGGTCCGAGGCAATTTTTGTGCCTAGGGAACCCGGTGTATCTGGAGAAGAAGATGATGGTTATTTGATATTCTTTGTCCACGACGAGAATACAGGgtactcatta ... gttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctccaatttttatagtttacactatcaaatttgttttgtgtcgttggtgtagGAAATCTGAAGTCAATGTGATTGATGCAAAGACAATGTCTGCTGATCCGGTGGCAGTTGTTGAGCTACCAAGCCGAGTTCCCTACGGATTCCATGCTTTC
       aatttttatagtttac  TA-rich tract