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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGgttaaatgctaaagatttcttttaattattcatattttgaagatatatttcacagcttgatatgttcccaagaattgactgttggaaatatgtattagtacacgatattaagttgatcattatgtaatataattgttgatgttaacttcgattcag

Basic information

species Oryza sativa
transcript LOC_Os12g16180.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g16180.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA10G43760.2 (Glycine max), 5'ss of exon 5
CCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGgttaaatgctaaagatttcttttaattattcatattttga-agatatatttcacagcttgatatgttcccaagaattgactgttggaaatatgtattagtacacgatattaagttgatcattatgtaatataattgttgatgttaacttcgattcag
| |  | || || || |||||||| ||| | |   |  |  | ||||||||  | ||   | | ||||||||||| |||||||| || |||||||||||||||  || |       | ||||   || | || |  || | | |  |  |||| | | | |     ||   | |||  |   |   ||||   ||| |  |||                                                      
CTTGATGGGGGAATCCATGGGAGGAGCTGTGGCTTTACTTTTGCATAGGAAAAAGCCAGAATACTGGGATGGGGCAATTTTGGTCGCACCCATGTGCAAGgttccattcctttctctactttactttctacaaaaattaacacacgtgcttcata-cgttacgcactcttcataatcaatcat---aaatgattataaaaacaa-----------------------------------------------------

upper sequence: LOC_Os12g16180.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA20G38470.1 (Glycine max), 5'ss of exon 4
CCTTCTTGGTGAGTCAATGGGAGGCGCTATTGTGCTGATGCTACATAGGAAGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGgttaaatgctaaagatttcttttaattattcatattttga-agatatatttcaca-gcttgatatgttcccaagaattgactgttggaaatatgtattagtacacgatattaagttgatcattatgtaatataattgttgatgttaacttcgattcag
| |  | || || || |||||||| ||| | |  ||  |  | || |||||  | ||   | | ||||||||||| ||||||||||| |||||||||||||||  || |          || |  || |||  ||| |   | || ||   |||  |||| ||| ||| |  |   ||   | ||     ||| ||||  |                                                         
CTTGATGGGGGAATCCATGGGAGGAGCTGTGGCTCTACTTTTGCACAGGAAAAAGCCACAATACTGGGATGGGGCAATTTTGGTTGCACCCATGTGCAAGgttccattcctttctccaattatttttgttctcattctatcaaatttaacacacgtgcttcatacgttacacactcttcttt-ttattgctatatatttat---------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27548640|gb|CA767536.2|CA767536
EST:     AGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAG                         ATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAG
genomic: AGGAACCTACAAATTGGGATGGGGCTATTTTGGTTGCCCCCATGTGCAAGgttaaatgct ... ttcgattcagATTGTAGAAGATATGAAGCCTCGTCCCATTGTGATAACAATCCTAAGCAAG