1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACCAACCCCTCGCTCTCCCACTCATCTCGTCGGCGGCGGCGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccctctaatctctccctctctcgctctcgatatttcgtcgcgtgatttggtgtcggctgttccggtagtttctggttcgcgtggtagatcgctg...
species | Oryza sativa |
transcript | LOC_Os11g43620.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTCGGAG-GGATGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|86537089|gb|CI177295.1|CI177295
genomic: GGCGGAGCGGA-GGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|55439260|gb|CV732933.1|CV732933
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: AGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|15846851|gb|BI795127.1|BI795127
genomic: AGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAAT---G ACTGTTCCAGTTAACCC-AAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|86418484|gb|CI032693.1|CI032693
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCCAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|55439258|gb|CV732932.1|CV732932
genomic: CGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|8528391|gb|AU093206.1|AU093206
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|163921024|gb|EG710124.1|EG710124
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCEST: gi|87018205|gb|CI297418.1|CI297418
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACT-GTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCC
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|55442446|gb|CV734541.1|CV734541
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|426828|gb|D22902.1|D22902
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGA-NGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCTEST: gi|117223750|gb|CT842091.1|CT842091
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
EST: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCG ACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
genomic: CGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccct ... cttaatgcagACTGTTCCAGTTAACCCAAAACCTTTCTTGAACAACCTGACAGGGAAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACCAACCCCTCGCTCTCCCACTCATCTCGTCGGCGGCGGCGGCGGAGCGGAGGAGCACGGCGAGCTAGCTGCTCTACCTTGGAATGGCGgtaataccctctaatctctccctctctcgctctcgatatttcgtcgcgtgatttggtgtcggctgttccggtagtttctggttcgcgtggtagatcgctg
- - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctc