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...tcattacaaaatttgatttctgtactatacaatcgtgccttgggaattctttgatgatttctacttagggtgccaaatcaattttctgtcaattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAAGAACCCGATACGAAAACATCAGTGAAGGATTTAACCTTCAG
species | Oryza sativa |
transcript | LOC_Os11g39650.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGCTGTGTCATTCAGTGGAGAAGGTTCAATACTTGCGACTGGTGGTGAG GATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATTGATTCCATTCTTGAAEST: gi|218481861|gb|FG950156.1|FG950156
genomic: TAGCTGTGTCATTCAGTGGAGAAGGTTCAATACTTGCGACTGGTGGTGAGgtaagtggat ... aattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAA
EST: TAGCTGTGTCATTCAGTGGAGAAGGTTCTATACTTGCGACTGGTGGTGAG GATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAAEST: gi|58686189|gb|CK074876.1|CK074876
genomic: TAGCTGTGTCATTCAGTGGAGAAGGTTCAATACTTGCGACTGGTGGTGAGgtaagtggat ... aattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAA
EST: TAGCTGTGTCATTCAGTGGAGAAGGTTCAATACTTGCGACTGGTGGTGAG GATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAA
genomic: TAGCTGTGTCATTCAGTGGAGAAGGTTCAATACTTGCGACTGGTGGTGAGgtaagtggat ... aattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAA
attctttgatgatttctacttagggtgccaaatcaattttctgtcaattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAAGAACCCGATACGAAAACATCAGTGAAGGATTTAACCTTCAG
ctttgat putative branch site (score: 33)
aaatcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattacaaaatttgatttctgtactatacaatcgtgccttgggaattctttgatgatttctacttagggtgccaaatcaattttctgtcaattatgtagGATGGTCATTTAAGGGTCTTCAAATGGCCTTCCATGGATTCCATTCTTGAAGAACCCGATACGAAAACATCAGTGAAGGATTTAACCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - tacaaaa
- - - - - - - - -ttctgta
- - - - - - - - - - - - - - - - - gtgcctt
- - - - - - - - - - - - - - - - - - - - - - - - - ttgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtgcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg