1 5' 3' | 2 5' 3' |
...ggttttgctttctcacaaatcaagacaatcagttgctgccattccatttcattgattgatagtaccatacttactcttactgctgattgacttgaaacagATTTTGGAAGCTAGAAAGAAGCTATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATG
species | Oryza sativa |
transcript | LOC_Os11g35320.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
atttcattgattgatagtaccatacttactcttactgctgattgacttgaaacagATTTTGGAAGCTAGAAAGAAGCTATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATG
attgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttttgctttctcacaaatcaagacaatcagttgctgccattccatttcattgattgatagtaccatacttactcttactgctgattgacttgaaacagATTTTGGAAGCTAGAAAGAAGCTATCACGCAATTTGCAATCTGAGTCAAAGCCAGACAGCAACGAAGACATGGTAGCTGCTTCTTCCAGTAATATAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - -tgctttc
- - - - - - - - aaatcaa
- - - - - - - - - - - - acaatca
- - - - - - - - - - - - - - - - -tgctgcc
- - - - - - - - - - - - - - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgat