1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ggatctgtatgtgttagtttaccgatggaaagaactatgctccattcataacaattgtataatttagtattaaccagatgctgggttttcttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCA
species | Oryza sativa |
transcript | LOC_Os11g34360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAA GTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCEST: gi|88399320|gb|CI618510.1|CI618510
genomic: GTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAgtaaagtttc ... ttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGC
EST: GTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGACTCCTCCTTCATCAA GTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCEST: gi|29632005|gb|CB637014.1|CB637014
genomic: GTCGTCGCCGACGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAgtaaagtttc ... ttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGC
EST: CGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAA GTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGC
genomic: CGGGGCCGACCTCGCCGCCCCCGCCTCCTCCTTCATCAAgtaaagtttc ... ttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGC
tcataacaattgtataatttagtattaaccagatgctgggttttcttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCA
ttttcttact CT-rich tract
acaattgtataattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatctgtatgtgttagtttaccgatggaaagaactatgctccattcataacaattgtataatttagtattaaccagatgctgggttttcttactgtcagGTTCACGAATGTTACTTTCTGGAGAACTCCGGAATCAGCTGAATCACATGCAAAAATGGCACACAGTACAGGTCTGGTACAGGCCATTTTATTTGAAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - ctgtatg
- - - - - - - - - - - - - -gaaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgctg