1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ttacatttaattttgttacaacgaatgaaagaaactgagtttcagaaagtgatcaaaagttgacaatgttctgaaatgaggaaacatctgctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAAGGAATCTGACCAAGAAGAGCCGCAACCGCGGCGCCACCGATAATGGCG
species | Oryza sativa |
transcript | LOC_Os11g29840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGGTGACGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGGACACACTCCTCACAEST: gi|29660472|gb|CB656747.1|CB656747
genomic: ACGGTGACGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
EST: CGCCGGCCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAEST: gi|86503509|gb|CI146142.1|CI146142
genomic: CGCCGG-CGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
EST: CGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAEST: gi|86502350|gb|CI144983.1|CI144983
genomic: CGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
EST: CCGCCGGCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAEST: gi|29641691|gb|CB646698.1|CB646698
genomic: CCGCCGGCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
EST: CCGCCGGCGGTGGAATTCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAEST: gi|88198427|gb|CI198277.1|CI198277
genomic: CCGCCGGCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
EST: CCGCCGGCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAG ATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
genomic: CCGCCGGCGGTGGAATGCCGGCGACGGTGACGAAGAGCAAGTTTCAGAAGgtaacttttt ... ctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACA
aaagtgatcaaaagttgacaatgttctgaaatgaggaaacatctgctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAAGGAATCTGACCAAGAAGAGCCGCAACCGCGGCGCCACCGATAATGGCG
agttgac putative branch site (score: 2)
tctgctc putative PPT
atcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttacatttaattttgttacaacgaatgaaagaaactgagtttcagaaagtgatcaaaagttgacaatgttctgaaatgaggaaacatctgctcattgcagATCCTTCAAATCTTCCACAGGAAAGTCTACCCCGAGAACACACTCCTCACAAGGAATCTGACCAAGAAGAGCCGCAACCGCGGCGCCACCGATAATGGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - caacgaa
- - - - - - - - - - - - - -aaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - gatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaacat