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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtggctgctgctgctgctgctctgttttttcttttattccccctcggtgtcgtgttcgtccgtcgaggcgaagagatttctcatgggtgcgcgcgcgggcgcagGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGGCGGCT

Basic information

species Oryza sativa
transcript LOC_Os11g29710.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g29710.1 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM5G865508_T02 (Zea mays), 3'ss of exon 1
------------gtatgtggctgctgctgctgctgctctgttttttcttttattccccctcggtgtcgtgttcgtccgtcgaggcgaagagatttctcatgggtgcgcg-cgcgggcgcagGTGCAGGAGGTTCCGGGAGCTCGCGACGCACCCGGCGGTGCTGTCGCGCGCGTCGGCGGCGGCCGTCGCGGTGCGGTGGGGCGCGTGGTCGGAGGCGGCT
              | ||  || ||||     |  | |  ||    ||  | ||    ||   ||  | ||       |  |   |  |   ||   |   || ||||  |  |   |||||||||||||||||||||| |||||| ||||||| || ||||||||||| |||||||||||||||||||| ||||    |||   ||||||||| ||||| 
gtgagtagcataacaagtctct-ctgcatgcccgtcgcctttgcccctcgtctttgtgctgactgctgagtcttctgctgtacatgttggccttggccggcggcgcgcatcatgtatgcagGTGCAGGAGGTTCCGGGACCTCGCGGCGCACCCCGCCGTGCTGTCGCGTGCGTCGGCGGCGGCCGTCGCCGTGCCCGCGGGAAGGTGGTCGGATGCGGCG