1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTGCGTCTCCTCGAGCAGAGCAGAGCAGCGGCGTCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatccatctccctcctcctctccggcgacacttctcgaatccgcgctaaccctagcaattcttctcctgtag
species | Oryza sativa |
transcript | LOC_Os11g29490.3 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAANCCCCCAEST: gi|88364123|gb|CI610467.1|CI610467
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88301456|gb|CI597149.1|CI597149
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88364693|gb|CI612508.1|CI612508
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGTGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88694254|gb|CI738292.1|CI738292
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88397921|gb|CI583239.1|CI583239
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88696323|gb|CI739898.1|CI739898
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88393212|gb|CI616696.1|CI616696
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGAAG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88362606|gb|CI608755.1|CI608755
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88300206|gb|CI582440.1|CI582440
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88352589|gb|CI624528.1|CI624528
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88360778|gb|CI647788.1|CI647788
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88362123|gb|CI607123.1|CI607123
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88575694|gb|CI669839.1|CI669839
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88726828|gb|CI750483.1|CI750483
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88731112|gb|CI754725.1|CI754725
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCAEST: gi|88395315|gb|CI611232.1|CI611232
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
EST: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACG ATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
genomic: TCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatcc ... tctcctgtagATCCGGAAGATTCTCTCTCTGTGCCTTGAATAAACCCTCTTAAACCCCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGCGTCTCCTCGAGCAGAGCAGAGCAGCGGCGTCGCCGGCGTTGCTGCTCCCGCGCCGCCGCATCCTCGCTCGCCGGTGACGgtgagcatccatctccctcctcctctccggcgacacttctcgaatccgcgctaaccctagcaattcttctcctgtag
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT