1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtattttctctttaatgttgtgaataattaatttgaataaccagaaataacctgtctttaacttgaataaacagaaaatataacatgtctttcttttgctcatcagATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
species | Oryza sativa |
transcript | LOC_Os11g29390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAAAAATGACAGAACAGGAACAGGGACATTATCGAAATTTGGTTGTCAG ATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAGEST: gi|58685747|gb|CK074434.1|CK074434
genomic: AGAAAAATGACAGAACAGGAACAGGGACATTATCGAAATTTGGTTGTCAGgtattttctc ... tgctcatcagATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
EST: AAAATGACAGAACAGGAACAGGGACATTATCGAAATTTGGTTGTCAG ATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
genomic: AAAATGACAGAACAGGAACAGGGACATTATCGAAATTTGGTTGTCAGgtattttctc ... tgctcatcagATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
ctgtctttaacttgaataaacagaaaatataacatgtctttcttttgctcatcagATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
atataac putative branch site (score: 11)
tctttcttttgctcat putative PPT
tttaacttgaataaac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttctctttaatgttgtgaataattaatttgaataaccagaaataacctgtctttaacttgaataaacagaaaatataacatgtctttcttttgctcatcagATGCGGTTCAACTTAAGGAATAGCTTCCCATTGTTGACAACAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA