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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagagagagagaaagaggagagttccatgagagagaaataatgagtttgttattccatatgggcaggcattagctataaggatgactcatccaaacaatacctatgatgactacttgcacaatgtgtaaagactacttgataagcttaataccctctatattttcacattgtagATGCCTTAA

Basic information

species Oryza sativa
transcript LOC_Os11g29309.1
intron # 1
splice site 3'
intron type U2


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatgtgtaaagactacttgataagcttaataccctctatattttcacattgtagATGCCTTAA
                        gcttaat  putative branch site (score: 4)
                                ccctctatattttc  CT-rich tract
                                     tatattttcacatt  TA-rich tract