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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattcgatgtatttcttcctgtatcactgccttccattgacataacaatgcggtcaccttttgctgtattgttcaaatattaagtgagtagcattcttgttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAA

Basic information

species Oryza sativa
transcript LOC_Os11g19810.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22307842|gb|BQ909064.1|BQ909064
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTACGCNCGGTACGATTG
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGT--GGTA-GATTG
EST: gi|29659634|gb|CB655909.1|CB655909
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|89169071|gb|CI020611.1|CI020611
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|88837801|gb|CI079161.1|CI079161
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|86538465|gb|CI178671.1|CI178671
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|89188181|gb|CI115430.1|CI115430
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|86481094|gb|CI123727.1|CI123727
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|86503041|gb|CI145674.1|CI145674
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|88197045|gb|CI196895.1|CI196895
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|86874432|gb|CI316798.1|CI316798
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA
EST: gi|58695014|gb|CK083701.1|CK083701
EST:     GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                         GTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGCGGTAGATTGTTA
genomic: GTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAGgtaaattcga ... gttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccttttgctgtattgttcaaatattaagtgagtagcattcttgttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAA
                                        ttcttgttttc  CT-rich tract
             tattgttcaaatatta  TA-rich tract