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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggtaaattcgatgtatttcttcctgtatcactgccttccattgacataacaatgcggtcaccttttgctgtattgttcaaatattaagtgagtagcattcttgttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAA

Basic information

species Oryza sativa
transcript LOC_Os11g19810.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86538465|gb|CI178671.1|CI178671
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|86874432|gb|CI316798.1|CI316798
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGGTGAG                     
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTC-----Ggtgaggtaaa ... gttttc
EST: gi|89169071|gb|CI020611.1|CI020611
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|86481094|gb|CI123727.1|CI123727
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|89188181|gb|CI115430.1|CI115430
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|88197045|gb|CI196895.1|CI196895
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|86503041|gb|CI145674.1|CI145674
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|88837801|gb|CI079161.1|CI079161
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|29659634|gb|CB655909.1|CB655909
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT
EST: gi|58695014|gb|CK083701.1|CK083701
EST:     GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCG                         GTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGCGGTAGAT
genomic: GAAGAGTGACTAGAGAGTGTTTACCCACCTGTTGAACCTGTTGATACTCGgtgaggtaaa ... gttttcgcagGTGA----A-GGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaccttttgctgtattgttcaaatattaagtgagtagcattcttgttttcgcagGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTAGGTGGTAGATTGTTACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTTGTCATGTAAA
                                        ttcttgttttc  CT-rich tract
             tattgttcaaatatta  TA-rich tract