1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgaatgaatccttttaattactgtgttccttttggcatgaaaatgagctcataacatgatgtcctttggcaccaaacattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGAAGGATGAGGATGATAGCGGAGGTGAGGAAGAGGAGGAAGAAGAAGATC
species | Oryza sativa |
transcript | LOC_Os11g14010.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG CCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGEST: gi|32948276|gb|BP184848.1|BP184848
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCG
EST: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG CCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGEST: gi|58678314|gb|CK067001.1|CK067001
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCG
EST: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG CCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGEST: gi|58682935|gb|CK071622.1|CK071622
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCG
EST: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG CCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGEST: gi|29659063|gb|CB655338.1|CB655338
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCG
EST: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCAGGAAG CCATCGCGCCAGCCGGAACCCAACTTTAGGGGTCCAAAGATGCCACCTCCGEST: gi|58675845|gb|CK064532.1|CK064532
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCG
EST: CAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAG CCATCGCGCCAGCCGGAACCCAA
genomic: AAGAAAAAACCCCCAAGACCAGTGGCAAGAGCAATAAATCCGGCACGAAGgtaatgaatg ... cattccccagCCATCGCGCCAGCCGGAACCCAA
ttggcatgaaaatgagctcataacatgatgtcctttggcaccaaacattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGAAGGATGAGGATGATAGCGGAGGTGAGGAAGAGGAGGAAGAAGAAGATC
tcataac putative branch site (score: 27)
cattcccc putative PPT
atgaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgaatgaatccttttaattactgtgttccttttggcatgaaaatgagctcataacatgatgtcctttggcaccaaacattccccagCCATCGCGCCAGCCGGAACCCAACTCTAGGGGTCCAAAGATGCCACCTCCGAAGGATGAGGATGATAGCGGAGGTGAGGAAGAGGAGGAAGAAGAAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG