Sequence
atgc intronic sequence ATGC exonic sequence...gtgccatctgcatcttttgcataaaaatgaaaggaatgtttcccttttcaagtttgaccaaaacgtaagaattcctattaactgaattatttgtctgcagCCTGTGAATTCGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAACATCGAGAAATGGC
Basic information
| species | Oryza sativa |
| transcript | LOC_Os11g04935.1 |
| intron # | 2 |
| splice site | 3' |
| intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcaagtttgaccaaaacgtaagaattcctattaactgaattatttgtctgcagCCTGTGAATTCGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAACATCGAGAAATGGC
tattaac putative branch site (score: 1)
tttgtct putative PPT
tattaactgaattatt TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgccatctgcatcttttgcataaaaatgaaaggaatgtttcccttttcaagtttgaccaaaacgtaagaattcctattaactgaattatttgtctgcagCCTGTGAATTCGAATCAAAATGGAAGAACATCTCCCGGAAAATGGCACGCAAAAGGAGTGAACCTAGCATGACCTCATTGCTGCAACATCGAGAAATGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - -atctgca
- - - - - - - ttttgca
- - - - - - - - - - - - aaatgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaccaaa
