1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttatgtcgtacattccagttagaagaccgcttgtaattgagcaggcaccctgttcgtagaaaaaagatcaggtgtgctaattttttgcaattatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAA
species | Oryza sativa |
transcript | LOC_Os11g03470.4 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGEST: gi|88966008|gb|CI006763.1|CI006763
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGEST: gi|86491655|gb|CI134288.1|CI134288
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAG
EST: TGATCTNAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGEST: gi|89195888|gb|CI007307.1|CI007307
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAG
EST: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAAT GTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACGAAG
genomic: TGATCTTAGCTAGGCTTCTGGGGCAACAGATTAGCATGGAGAATATTAATgtatgcatat ... ttatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAG
caccctgttcgtagaaaaaagatcaggtgtgctaattttttgcaattatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAA
tgctaat putative branch site (score: 17)
ttatcttc putative PPT
taattttttgcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtcgtacattccagttagaagaccgcttgtaattgagcaggcaccctgttcgtagaaaaaagatcaggtgtgctaattttttgcaattatcttcagGTTGAGAGTTTATACCCCAGTGAATTAGGACCTGATGCAATGTCCACAAAGGACTTCCTTGAAAGTGGTTTAGTACAGCTTGATAAAAGCATTGAAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -acattcc
- - - - - - - - - - - - - - gcttgta
- - - - - - - - - - - - - - - - - - - - gcaggca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttttgca