1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagtttttatagttcttttggtacttcttccaattcctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGATTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
species | Oryza sativa |
transcript | LOC_Os11g03380.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|33689369|gb|CF317608.1|CF317608
genomic: AAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: AACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29658171|gb|CB654446.1|CB654446
genomic: AACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: TAAGTGAAGATCTGAACAACCATCACAACATGGATTCCATTCAT GGATTGGTGGCATCAC-AACATAAAAAGAACTCGAGTGGACAGACTGATCTEST: gi|29672707|gb|CB668982.1|CB668982
genomic: TAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAAC-TAAAAAGAACCCGAGTGGACAGACTGATCT
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29663528|gb|CB659803.1|CB659803
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29678425|gb|CB674700.1|CB674700
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29658170|gb|CB654445.1|CB654445
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29678424|gb|CB674699.1|CB674699
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|27545747|gb|CA763944.2|CA763944
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29663529|gb|CB659804.1|CB659804
genomic: GATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29672708|gb|CB668983.1|CB668983
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: AACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGEST: gi|29624905|gb|CB629916.1|CB629916
genomic: AACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
EST: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCAT GGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
genomic: GTTCTGTAAGTGAAGATCTGAACAAACATCACAACATGGATTCCATTCATgtaagttttt ... tacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTG
tttggtacttcttccaattcctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGATTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
tattgac putative branch site (score: 29)
atttattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttatagttcttttggtacttcttccaattcctcttttccatttattgaccacatgtacattccagGGATTGGTGGCATCACAAACTAAAAAGAACCCGAGTGGACAGACTGATCTGATTGTCTTCTGTGATGGTGGTTTCAAGGATAACACAAAATCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG