1 5' 3' |
...tcatttatagttctaaatgttgctggttgagtcattcttgtcgaacagaatcataataaatttgtgtactgatcttgactctgtggaccgcacaaatcagGTTGGCGCCAAAGGTTGTAACAATGGTGGAGCAGGATCTGAGCCACTCAGGCTCCTTCCTGGCACGTTTTGTGGAGGCCATCCACTACTATTCGGCACTG
species | Oryza sativa |
transcript | LOC_Os11g03110.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
cagaatcataataaatttgtgtactgatcttgactctgtggaccgcacaaatcagGTTGGCGCCAAAGGTTGTAACAATGGTGGAGCAGGATCTGAGCCACTCAGGCTCCTTCCTGGCACGTTTTGTGGAGGCCATCCACTACTATTCGGCACTG
ataataaatttgtgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatttatagttctaaatgttgctggttgagtcattcttgtcgaacagaatcataataaatttgtgtactgatcttgactctgtggaccgcacaaatcagGTTGGCGCCAAAGGTTGTAACAATGGTGGAGCAGGATCTGAGCCACTCAGGCTCCTTCCTGGCACGTTTTGTGGAGGCCATCCACTACTATTCGGCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - -attcttg
- - - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaccg