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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtcctttatactttgtttttaattattcttttctatcacattgataccttctgtattatcgtcagaagacaatgctaaatgagttatgagagtggatttctacctgaaccag

Basic information

species Oryza sativa
transcript LOC_Os10g21810.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g21810.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G158252_T01 (Zea mays), 5'ss of exon 8
TTTCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtccttt--atactttgtttttaattattcttttctatcacattgatacct-tctgtattatcgtcagaagacaatgctaaatgagttatgagagtggatttctacctgaaccag
||||||||||||||||| ||||||||| | |||||||||||||||||  ||||| ||| |||   ||| ||  |||||   ||||  |   || | || | ||   | | | | || |  ||| |||||||  |||||| | || ||| |  |||||||| | ||||  ||
TTTCTAGCAACTGTTTCCCATGAGATTCGGACTCCAATGAATGGTGTTTTAGgtctgtacttctgatatttcttttttgtctattaatacataccgcagttatttgtgtttatgttttaatca-aagacaa--ctaaataaattttgaaaa-ggatttcttcttgaattag

upper sequence: LOC_Os10g21810.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA02G47610.1 (Glycine max), 5'ss of exon 8
TTTCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtcctttatactttgtttttaattattcttttctatcacattgataccttctgtattatcgtcagaagacaatgctaaatgagttatgagagtggatttctacctgaaccag
||||| ||||| |||||||||||||| || |||||||||||||||||  |||||   |      || ||  | |||   ||     | | | |  ||  |||| |  || || ||  ||||    |  |   |||| | ||   ||                      
TTTCTTGCAACAGTTTCACATGAGATCAGGACTCCAATGAATGGTGTTTTAGgta-attggaagtatttgttgtttttgtagatgatcccaacctatcaatacttggtg-ataattatcag----ctgtttcaaatcattttccag----------------------

upper sequence: LOC_Os10g21810.1 (Oryza sativa), 5'ss of exon 8
lower sequence: PP1S50_141V6.1 (Physcomitrella patens), 5'ss of exon 7
TTTCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtcctttatactttgtttttaattattcttttctatcacattgataccttctgtattatcgtcagaagacaatgctaaatgagttatgagagtggatttctacctgaaccag
||  | |||||||| || || |||||| | ||||||||||||||||| ||||||| ||     ||| | | |    ||   ||   ||  || || ||| ||  ||||   |         |  |   |||   ||    | ||    || |  |||   |||  |||
TTCTTGGCAACTGTGTCTCACGAGATTCGGACTCCAATGAATGGTGTTCTAGgttagt-----ataatatatccacaacacttgaatttcat-actttgttat-ttctaagt---------agaattgtgc-gcatattgtctgcttatgtacatctctgtgatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29632499|gb|CB637508.1|CB637508
EST:     TCTAGCAACTGTTTCACATGAGATTATAACTCCAATGAATGGTGTACTAG                         GTATGCTACAGATGC
genomic: TCTAGCAACTGTTTCACATGAGATTAGAACTCCAATGAATGGTGTACTAGgtttgtcctt ... cctgaaccagGTATGCTACAGATGC