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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTTGCGTTATTTGGACCATAAAGTGCGCTATGTTCGGAATTTTACTGACATTGATGACAAGgtgatttatgggtcaaatttattttcaaacaagtgatgctggtcctcattatctgaaagctaaatttaatgtaaacaaggaatcgtattgtatttattta...

Basic information

species Oryza sativa
transcript LOC_Os09g38420.1
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g38420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G156565_T01 (Zea mays), 5'ss of exon 2
GTACTTGCGTTATTTGGACCATAAAGTGCGCTATGTTCGGAATTTTACTGACATTGATGACAAGgtgatttatgggtcaaatttattttcaaacaa--gtgatgctg-gtcctcattatctgaaagctaaatttaatgtaaacaaggaatcgtattgtatttattta-
||||||||| ||||||||| || |||| |||||||||||||| || || |||||||||||||||||||||| | || ||||||||| |||| | |   |||| |||| ||   |  | |||   | | ||| | ||   |||  | |   |   |  |||||  ||| 
GTACTTGCGCTATTTGGACTATGAAGTTCGCTATGTTCGGAACTTCACCGACATTGATGACAAGgtgatttttagg-caaatttatcttcatatatatgtgaagctgagttgcctgtttctattaaccaaactgaa---aaatgacgttgcagttattattttcttac

upper sequence: LOC_Os09g38420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM2G002851_T01 (Zea mays), 5'ss of exon 2
GTACTTGCGTTATTTGGACCATAAAGTGCGCTATGTTCGGAATTTTACTGACATTGATGACAAGgtgatttatgggtcaaatttattttcaaacaa--gtgatgctggtcc-tcattatctgaaagctaaatttaatgtaaacaaggaatcgtattgtatttattta-
||||||||| ||||||||| || |||| |||||||||||||| || || ||||||||||||||||||| || |||| ||||||| ||| |||| |   ||||  |||     ||  | ||||| | |||| |||||   ||   | |   |   || |||||  ||| 
GTACTTGCGCTATTTGGACTATGAAGTTCGCTATGTTCGGAACTTCACCGACATTGATGACAAGgtgacttttggg-caaatttgtttgcaaatatatgtgaaactgacttatctgtttctgataactaattttaa---aactgaaggtgcagtttttattttcttaa

upper sequence: LOC_Os09g38420.1 (Oryza sativa), 5'ss of exon 2
lower sequence: PP1S504_12V6.1 (Physcomitrella patens), 5'ss of exon 2
GTACTTGCGTTATTTGGACCATAAAGTGCGCTATGTTCGGAATTTTACTGACATTGATGACAAGgtgatttatgggtcaaatttattttcaaacaagtgatgctggtcctcattatctgaaagctaaatttaatgta-aacaaggaatcgtattgtatttattta----
||||||        | |   |  | |||   || || ||||||||||||||||||||||| ||||| | |  |  |  |  |||||  |  |     | ||  |  |    ||    |     ||||| |  |   |  || ||     |   || | |  || |    
GTACTTAAAGAGCGTAGGTTACGACGTGACTTACGTGCGGAATTTTACTGACATTGATGATAAGgtaactcgtttg--agctttatccttgact---tcatatttttttggatatgtttgtgtctaaactccacacatgaccagattctgcgctggagtggttcaatcg