1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattttatttgtaaatttactacaatatttaacatgagagctgtttgcctcagctattggtaaaaggagaattactttgttgataagatcactct...
species | Oryza sativa |
transcript | LOC_Os09g33860.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGAEST: gi|11025935|gb|AU162536.1|AU162536
genomic: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
EST: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGTTGACCCGAGEST: gi|38480963|gb|CF965052.1|CF965052
genomic: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATG-CGTTGACCCGAG
EST: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGAEST: gi|218487637|gb|FG969462.1|FG969462
genomic: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
EST: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGAEST: gi|86250865|gb|CI007728.1|CI007728
genomic: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
EST: GTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGAEST: gi|109711829|gb|CI028999.1|CI028999
genomic: GTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
EST: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGG GCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
genomic: AACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattt ... ttgtacgcagGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGCGTTGACCCGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTGGTTACATGGgtaagcattttatttgtaaatttactacaatatttaacatgagagctgtttgcctcagctattggtaaaaggagaattactttgttgataagatcactct
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