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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgg...

Basic information

species Oryza sativa
transcript LOC_Os09g10710.2
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g10710.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GRMZM2G049155_T03 (Zea mays), 5'ss of exon 6
GATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtt--tgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgg----
|  || ||||   ||| ||||||||| ||||| || |||||| | ||||||||||||||||||||| ||||   |  |  || |||    |||  ||       ||  |||||| |  |||||||  | |||       | |||   |||     |  |||  |  | |||    
GGCCTTTATGTGCTGGTTTATGACATTAATACGGCAAATGAAACCTGGGAGTGGGTTGATCTTAAAGAGgtacatatatgctatttataatgagaat----gctttggtcacttgacattttcat-atcttcctttcctatattctttttgttttttaattcgac-actggatgg

upper sequence: LOC_Os09g10710.2 (Oryza sativa), 5'ss of exon 7
lower sequence: GLYMA20G39100.1 (Glycine max), 5'ss of exon 5
GATCTGTATGCATTGGCTTATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacctttttcctgtgaacatttgaaaattcttcactttaggttttcattgttttctaggggaacattgcatttaaaaatctattgaattattgg-----
|  ||  |||| |||| |||||| || ||| |||| |||||| |||||||||||||| |||||||| ||||    ||  |||    | | || |||      |   ||| |      |   ||    || |||        |   |||     ||| || ||  | |       
GGACTACATGCTTTGGTTTATGATATGAATTCAGCAAATGAAACATGGGAGTGGGTTAATCTTAAAGAGgta---aaattttacaatattaatattcttccgtctatcattcaca--tacaatctagttttagcttggttctttcttttcttttctttttaagcaatattttcc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29665252|gb|CB661527.1|CB661527
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|29640581|gb|CB645590.1|CB645590
EST:     ACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|29664516|gb|CB660791.1|CB660791
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|38477911|gb|CF962044.1|CF962044
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|58675371|gb|CK064058.1|CK064058
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|29642065|gb|CB647072.1|CB647072
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|58586082|gb|CF984390.1|CF984390
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGA
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGA
EST: gi|58683751|gb|CK072438.1|CK072438
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
EST: gi|58655308|gb|CK043988.1|CK043988
EST:     ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAG                         ATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG
genomic: ATGACATAAATACAGCTAATGAATCATGGGAGTGGGTTGATCTTAAACAGgtttgcaacc ... taaattacagATGGGACCTGAAGATATAAGATGGCAAGGTGATGACCCTGGGATATATCAG