1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...agctaattaatcaacaaccattgctccctccaatgttatcgtagtagtacgtacgtagtatcatgcatcttgtgtagttaacaaacaagcgatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACACCAACCTTAAACCCCGCCCATCCACCTGGCTCTCCAAGGCCGACCTCC
species | Oryza sativa |
transcript | LOC_Os08g44640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACEST: gi|33683928|gb|CF312167.1|CF312167
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACEST: gi|58589213|gb|CF987521.1|CF987521
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACEST: gi|29623767|gb|CB628778.1|CB628778
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACEST: gi|58594128|gb|CF992436.1|CF992436
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
EST: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCG GGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
genomic: ACAAGGGCAGCACGCCATGGCCGACCGTGCTCTGGCTCCAGGGAGGCCCGgtaatcaatt ... gatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGAC
agtacgtacgtagtatcatgcatcttgtgtagttaacaaacaagcgatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACACCAACCTTAAACCCCGCCCATCCACCTGGCTCTCCAAGGCCGACCTCC
agttaac putative branch site (score: 2)
ttaacaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctaattaatcaacaaccattgctccctccaatgttatcgtagtagtacgtacgtagtatcatgcatcttgtgtagttaacaaacaagcgatattgcagGGCGCTTCGGGCGTGGGTTATGGCAACTTCATGGAGATCGGGCCGCTGGACACCAACCTTAAACCCCGCCCATCCACCTGGCTCTCCAAGGCCGACCTCC
- - - - - -caacaac
- - - - - - - - - - -tgctccc
- - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taacaaa