1 5' 3' | 2 5' 3' | 3 5' 3' |
...gtttaatatttcctagctgaaatgctcaacagatagcaaatttctatacatgtttgtcaactcgcattgcttatttacgtatctttgataacttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCGAGCAGTTGGTGTTGAACATATCCCAGAGTTGGTTACTTCGTCTATTGA
species | Oryza sativa |
transcript | LOC_Os08g44280.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAG GCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCEST: gi|33817247|gb|CF334460.1|CF334460
genomic: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGC
EST: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAG GCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGEST: gi|33814508|gb|CF333118.1|CF333118
genomic: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTG
EST: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAG GCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCEST: gi|33817249|gb|CF334461.1|CF334461
genomic: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGC
EST: ATGTTGGATCAG GCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCEST: gi|9866234|gb|AU101984.1|AU101984
genomic: ATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGC
EST: CTGGAGAAGCACCTTCAAGCCTGGNATGCGTGCTCTGGATGTTGGATCAG GCACAGGGTACCTAACAGCCTT-NTTCGCGATTATGGTTGGCCCAGAAGGGEST: gi|29689479|gb|CB685754.1|CB685754
genomic: CTGGAGAAGCACCTTC-AGCCTGGCATGCGTGCTCTGGATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAG-CTTGCTTCGCGATTATGGTTGGACCAGAAGGG
EST: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAG GCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGC
genomic: CCTGGAGAAGCACCTTCAGCCTGGCATGCGTGCTCTGGATGTTGGATCAGgtctcccgta ... acttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGC
atacatgtttgtcaactcgcattgcttatttacgtatctttgataacttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCGAGCAGTTGGTGTTGAACATATCCCAGAGTTGGTTACTTCGTCTATTGA
tgataac putative branch site (score: 2)
ttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttaatatttcctagctgaaatgctcaacagatagcaaatttctatacatgtttgtcaactcgcattgcttatttacgtatctttgataacttcaacagGCACAGGGTACCTAACAGCTTGCTTCGCGATTATGGTTGGACCAGAAGGGCGAGCAGTTGGTGTTGAACATATCCCAGAGTTGGTTACTTCGTCTATTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - ctagctg
- - - - - - - - - -aaatgct
- - - - - - - - - - - - - caacaga
- - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat