1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GACACCAGCCTCAATCGTTTTGATCATCTACTGCTTCCTTTGTGTATGGTTTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtattagttcgattcagcattaatttcctaaacacaacgatttcaattcattagctaatcatgtagccctgttcttttgcag
species | Oryza sativa |
transcript | LOC_Os08g42370.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAG ACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTATEST: gi|29666438|gb|CB662713.1|CB662713
genomic: TTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtatta ... tcttttgcagACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTAT
EST: GTCTTCCATTGCTATTTGATGAGCACCAACCAG ACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTATEST: gi|58597415|gb|CK007943.1|CK007943
genomic: GTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtatta ... tcttttgcagACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTAT
EST: GGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAG ACAACTTATGAGAACTTCACGGTATCGCTACGATAGACGGGCTAACCCGTAEST: gi|25802931|gb|CA758892.1|CA758892
genomic: GGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtatta ... tcttttgcagACAACTTATGAGAACTTCA-GGTATCGCTACGATAGACGGGCTAACCCGTA
EST: TGTNTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAG ACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTATEST: gi|29672456|gb|CB668731.1|CB668731
genomic: TGT-TGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtatta ... tcttttgcagACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTAT
EST: TTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAG ACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTAT
genomic: TTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtatta ... tcttttgcagACAACTTATGAGAACTTCAGGTATCGCTACGATAGACGGGCTAACCCGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACACCAGCCTCAATCGTTTTGATCATCTACTGCTTCCTTTGTGTATGGTTTGTTGGTGGTCTTTCTGTCTTCCATTGCTATTTGATGAGCACCAACCAGgtaggtattagttcgattcagcattaatttcctaaacacaacgatttcaattcattagctaatcatgtagccctgttcttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG