1 5' 3' | 2 5' 3' | 3 5' 3' |
...gcactgaccatggttgcttgtcataattttttctgcatgtatttctaaggtttatacattttcaaaatatacaaataactaatttgttttcattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTCGTAACACTCATCCTCCTGAGCCTGAAGGCTTTGATGGGAGCAATGATT
species | Oryza sativa |
transcript | LOC_Os08g42370.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGATTGGGGTATCTCGGTGATGGTTGTAGTGGTTGTCTTCACCGTTTAT GATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTEST: gi|88327636|gb|CI646829.1|CI646829
genomic: GTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTATgtaagcatac ... cattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
EST: ATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTAT GATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTEST: gi|29666673|gb|CB662948.1|CB662948
genomic: ATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTATgtaagcatac ... cattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
EST: GTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTAT GATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTEST: gi|88301943|gb|CI667789.1|CI667789
genomic: GTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTATgtaagcatac ... cattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
EST: ATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTAT GATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTEST: gi|29672455|gb|CB668730.1|CB668730
genomic: ATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTATgtaagcatac ... cattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
EST: GTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTAT GATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
genomic: GTGATTGGGGTATCTCGGTGATGGTTGTGGTGGTTGTCTTCACCGTTTATgtaagcatac ... cattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCT
taaggtttatacattttcaaaatatacaaataactaatttgttttcattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTCGTAACACTCATCCTCCTGAGCCTGAAGGCTTTGATGGGAGCAATGATT
aactaat putative branch site (score: 38)
tttgttttcatttt CT-rich tract
tttatacattttcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcactgaccatggttgcttgtcataattttttctgcatgtatttctaaggtttatacattttcaaaatatacaaataactaatttgttttcattttatagGATTTGACGCTGCTTCTCCTTACTTCTGGTAGAGATCCTGGTATTATACCTCGTAACACTCATCCTCCTGAGCCTGAAGGCTTTGATGGGAGCAATGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
gcactga
- - - - - - gttgctt
- - - - - - - - - - - - - - - - -tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaata