1 5' 3' | 2 5' 3' |
GCGCGCCCCACGGTCCGTCGTGCGGGCGGCCATCTCCGTCGAGAAGGGGGAGAAGGCGTACACGGTGGAGAAGTCCGAGGAGATCTTCAACGCCGCCAAGgtgacccgcctcctctctttcctctccttgttgcgtggagatgcgtctcctcgcgcttcgttcaggggggggggggggttactccattacttgcggcatt...
species | Oryza sativa |
transcript | LOC_Os08g41990.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCGAGGAGATCTTCAACGCCGCCAAG GAGTTGATGCCTGGGGGTGTTAATTCACCAGTTCGTGCCTTCAAATCAGTT
genomic: TCCGAGGAGATCTTCAACGCCGCCAAGgtgacccgcc ... ggcattacagGAGTTGATGCCTGGGGGTGTTAATTCACCAGTTCGTGCCTTCAAATCAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGCGCCCCACGGTCCGTCGTGCGGGCGGCCATCTCCGTCGAGAAGGGGGAGAAGGCGTACACGGTGGAGAAGTCCGAGGAGATCTTCAACGCCGCCAAGgtgacccgcctcctctctttcctctccttgttgcgtggagatgcgtctcctcgcgcttcgttcaggggggggggggggttactccattacttgcggcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcgcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggggggg