1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAGGACAGGTTATAGTGCTCAGGGGACAGGTGCAGCTTTGATGATGCCTGTTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttatataatttcagctagtgcttgactctctagaagaattgtgaaaacaaaacaatataattcgtttatgagatacaagtatgtttcttctgacgaatgagagctctaataattcactgttattatgcag
species | Oryza sativa |
transcript | LOC_Os08g41730.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGG GATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGACEST: gi|27576638|gb|CA999332.1|CA999332
genomic: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttata ... tattatgcagGATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGAC
EST: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGG GATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGACEST: gi|86528394|gb|CI168600.1|CI168600
genomic: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttata ... tattatgcagGATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGAC
EST: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGG GATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGACEST: gi|86528608|gb|CI168814.1|CI168814
genomic: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttata ... tattatgcagGATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGAC
EST: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGG GATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGAC
genomic: TTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttata ... tattatgcagGATGCAGTGACACCATTATCTCAATCAGATGCTGTCGATCTGGTTAAGGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGACAGGTTATAGTGCTCAGGGGACAGGTGCAGCTTTGATGATGCCTGTTCTGGACAATCAGCTAAAATCTCCTAGCCCATTACTACTTCCAGCTCGGgtgagttatataatttcagctagtgcttgactctctagaagaattgtgaaaacaaaacaatataattcgtttatgagatacaagtatgtttcttctgacgaatgagagctctaataattcactgttattatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC