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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttattccgcgaataagcgaaacgatggctccgctaggttcttgatttcttttacatttctgatctcatttgagctctacatttttttttaatttgcagAAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTTGAGGCTGTTATCAATGTACTTGTAAATTGCAGAGAATGGGATTTTCGTTTCCCCAGTGC

Basic information

species Oryza sativa
transcript LOC_Os08g41470.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86843137|gb|CI341317.1|CI341317
EST:     GCCACGGCAACGCCGCCAAGCGATACCACGACGACGACTTCGCCTCCACG                         AAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTTGAGGCTGTTA
genomic: GCCACGGCAACGCCGCCAAGCGATACCACGACGACGACTTCGCCTCCACGgtgagccact ... taatttgcagAAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTTGAGGCTGTTA
EST: gi|16579089|gb|BI813184.1|BI813184
EST:     CGACGACGACTTCGCACTCCACG                         AAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTCGAGGCATGT
genomic: CGACGACGACTTCGC-CTCCACGgtgagccact ... taatttgcagAAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTTGAGGC-TGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttcttttacatttctgatctcatttgagctctacatttttttttaatttgcagAAGTGCTCCTGCTTTGGATGGTGCAAATAGAGATGGATTTTGAGGCTGTTATCAATGTACTTGTAAATTGCAGAGAATGGGATTTTCGTTTCCCCAGTGC
                                          ttttaat  putative branch site (score: 3)
                              ctctacattttttttt  CT-rich tract
                               tctacattttttttta  TA-rich tract