1 5' 3' | 2 5' 3' | 3 5' 3' |
...aatcacctgaactcctaagttgaactgtgaaatgtgctataaggtgtcctggctctaatgtgttcatttgttattgacaacttgctcatgcttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTGAGTTTATCAGCTACCCTATCTCTCTATGGACTGAGAAGACCACTGAGA
species | Oryza sativa |
transcript | LOC_Os08g39140.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|6934863|gb|AU082400.1|AU082400
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|29627082|gb|CB632093.1|CB632093
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG GTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|86596515|gb|CI284826.1|CI284826
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAAGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|6934912|gb|AU082449.1|AU082449
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|86894496|gb|CI308249.1|CI308249
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|27921206|gb|CB097014.1|CB097014
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|33655302|gb|CF277916.1|CF277916
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|88830945|gb|CI079379.1|CI079379
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|29628986|gb|CB633997.1|CB633997
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|88217496|gb|CI217345.1|CI217345
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|88236164|gb|CI235366.1|CI235366
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCCEST: gi|33665378|gb|CF296345.1|CF296345
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTEST: gi|86431030|gb|CI083453.1|CI083453
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
EST: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAG TTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
genomic: AGCAGCTTGGGAGGGGTACTAAGATCACCCTCTACCTCAAGGATGATCAGgtactaacag ... cttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCT
gtcctggctctaatgtgttcatttgttattgacaacttgctcatgcttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTGAGTTTATCAGCTACCCTATCTCTCTATGGACTGAGAAGACCACTGAGA
tattgac putative branch site (score: 2)
tgcttcct putative PPT
atttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcacctgaactcctaagttgaactgtgaaatgtgctataaggtgtcctggctctaatgtgttcatttgttattgacaacttgctcatgcttcctgcagTTGGAATACCTTGAAGAGCGCCGCCTCAAGGACCTGATCAAGAAGCACTCTGAGTTTATCAGCTACCCTATCTCTCTATGGACTGAGAAGACCACTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - -cctgaac
- - - - - - - - - - tgaactg
- - - - - - - - - - - - - - - aatgtgc
- - - - - - - - - - - - - - - - - - - - - - - -cctggct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgctc