1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtaatgttctattactgtgtttattacatcattgtttcccataaagcatttctttgagtaattatttaatatatcatactctctagGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGGAGGGCAGACAAGGCAAGATTGCTTTGTCACCAACTGGGATACTCTCTCA
species | Oryza sativa |
transcript | LOC_Os08g37350.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TACCCGACCACTTACATCATATCTTTTGGGAGGGCTTCATTCAAAAAATT GTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGGEST: gi|58691954|gb|CK080641.1|CK080641
genomic: TACCCGACCACTTACATCATATCTTTTGGGAGGGCTTCATTCAAAAAATTgtaatgttct ... tactctctagGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGG
EST: TTTGGGAGGGCTTCATTCAAAAAATT GTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAGAACTCGTTGGGG
genomic: TTTGGGAGGGCTTCATTCAAAAAATTgtaatgttct ... tactctctagGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGG
ttgtttcccataaagcatttctttgagtaattatttaatatatcatactctctagGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGGAGGGCAGACAAGGCAAGATTGCTTTGTCACCAACTGGGATACTCTCTCA
atttaat putative branch site (score: 11)
tactctct putative PPT
ataaagcatttctttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgttctattactgtgtttattacatcattgtttcccataaagcatttctttgagtaattatttaatatatcatactctctagGTTCCAAAAAGGAATGGTGCTTCATGTGTGAATTTGAAAAACTCGTTGGGGAGGGCAGACAAGGCAAGATTGCTTTGTCACCAACTGGGATACTCTCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA