1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agaatgcttgcccatgatacatcaccaggctaagttgtagttgttacttcaatcttataggatctgtatatgattatgctcatccgcatcgtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCA
species | Oryza sativa |
transcript | LOC_Os08g20270.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCG GTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATEST: gi|218488302|gb|FG946415.1|FG946415
genomic: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGG-ACCCG GTTTAGTTACACATA-TACGA-CAGAGCCATGGTGCTATACATAAATCGATEST: gi|55409410|gb|CV721786.1|CV721786
genomic: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: ACTGGGGAACCCG GTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATEST: gi|86251794|gb|CI018986.1|CI018986
genomic: ACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCG GTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATEST: gi|33810212|gb|CF330997.1|CF330997
genomic: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: CTGGGGAACCCG GTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATEST: gi|38476889|gb|CF961022.1|CF961022
genomic: CTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCG GTTTAGTTACACATACTACGACAAGAGCCATGGTGCTATACATAAATCGATEST: gi|87029686|gb|CI257481.1|CI257481
genomic: CCGAAGAACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
EST: ACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCG GTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
genomic: ACTTCTTTTCTATCTCCTCAGATTTCTGCCACTGGGGAACCCGgtaaatactt ... gtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGAT
acttcaatcttataggatctgtatatgattatgctcatccgcatcgtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCA
tcgtctc CT-rich tract
tatatgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaatgcttgcccatgatacatcaccaggctaagttgtagttgttacttcaatcttataggatctgtatatgattatgctcatccgcatcgtctcatcagGTTTAGTTACACATACTACGATAAGAGCCATGGTGCTATACATAAATCGATAGAGGCCTTGGACCGCATGGGCATGGAGATAATAGAGACTGGTAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - tgcttgc
- - - - - - catgata
- - - - - - - - - - - caccagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccgcatc