1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcacccagcagcctatacaacatacatgcatgcatccctttgggtaaatccagtctatagcacgacatgcaccaccacccgaaaacatcctctgct...
species | Oryza sativa |
transcript | LOC_Os08g12449.8 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGAATCTCG ATGATTGCTTAAACGGTGAAGAAGTGATTTAGATGCTGACATTTTCCTGATEST: gi|38470687|gb|CF954818.1|CF954818
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ctttgtatagATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
EST: TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG ATGATNGCTTAAACGGTGAAGAAGTGATTTAGATGCTGACATTTTCCTGATEST: gi|5816513|gb|AU078110.1|AU078110
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ctttgtatagATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
EST: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG ATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGATEST: gi|218496359|gb|FG958513.1|FG958513
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ctttgtatagATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
EST: TCACCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG ATGATAGCTTAAACGGTGAAGAAGTGATTTAGATGCTGACATTTTCCTGATEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ctttgtatagATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
EST: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCG ATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
genomic: TCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcaccc ... ctttgtatagATGATTGCTTAAACGGTAAAGAAGTGATTTAGATGCTGACATTTTCCTGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCGAGCAGCCGACGTCATTCCTGGAGTTGTGCCATGCCGCCATGGAGCTTCGCCGTCGCTGTGGCTCTGCAGACATCCCTAGCCTTGTCTAGCATCTCGgtgagcacccagcagcctatacaacatacatgcatgcatccctttgggtaaatccagtctatagcacgacatgcaccaccacccgaaaacatcctctgct
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