1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtcgtctcctctcttctaccgttccataatttcctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC
species | Oryza sativa |
transcript | LOC_Os08g12449.7 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTG CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|5816512|gb|AU078109.1|AU078109
genomic: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTG CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218496192|gb|FG947319.1|FG947319
genomic: TGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC--- CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|218482913|gb|FG954573.1|FG954573
genomic: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: TGCCGCCGGCCGTGAAGACGACGTGCCGTTGCCATCGCCATTGTGCCGTG CCACGGGAACGCAGAGCTCACCGACGATGCTCTGGAGCGCGCACTGGACGCEST: gi|88358004|gb|CI650740.1|CI650740
genomic: TGCCGCCGGCCGTGAAGACGACG-GCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
EST: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCC--- CCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
genomic: TTGCCGCCGGCCGTGAAGACGACGGCCGTTGCCATCGCCATTGTGCCGTGgtcgtctcct ... tccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGC
cctcatcatgccgatcatcttctattttgacaccacgtcatttcatccactgcagCCACGGGAACGCAGAGCTCGCCGACGATGCTCTGGAGCGCGCACTGGACGCCGTCATCGGGTTCTCATCGTCGTTCCGACCGAACCGAACCACCCCAAGC
ttttgac putative branch site (score: 3)
tttcatcc putative PPT
ttctatttt TA-rich tract