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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagtttaatttctttgctcttacattttcaacctgtgtccatgttgctctttgcacttgatctttctggtggaataaaatctgtgattatgtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATCTACTACTACCATGCCCGATCAGACATGTCAGGCTTCATGCAGACATCC

Basic information

species Oryza sativa
transcript LOC_Os08g06470.2
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58606826|gb|CK034859.1|CK034859
EST:     GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAG                         ATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCAT
genomic: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAGgtcagtgttc ... gtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCAT
EST: gi|58597975|gb|CK008503.1|CK008503
EST:     GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAG                         ATCGGTCCTTTGTGGAGG
genomic: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAGgtcagtgttc ... gtgcgtgcagATCGGTCCTTTGTGGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctctttgcacttgatctttctggtggaataaaatctgtgattatgtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATCTACTACTACCATGCCCGATCAGACATGTCAGGCTTCATGCAGACATCC
         acttgat  putative branch site (score: 5)
                           aataaaatct  TA-rich tract