1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tagtttaatttctttgctcttacattttcaacctgtgtccatgttgctctttgcacttgatctttctggtggaataaaatctgtgattatgtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATCTACTACTACCATGCCCGATCAGACATGTCAGGCTTCATGCAGACATCC
species | Oryza sativa |
transcript | LOC_Os08g06470.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAG ATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATEST: gi|58597975|gb|CK008503.1|CK008503
genomic: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAGgtcagtgttc ... gtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCAT
EST: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAG ATCGGTCCTTTGTGGAGG
genomic: GCACTTACATACTTCCAACTTGCTGTCGAGGATCATGAGTGGTGGTGGAGgtcagtgttc ... gtgcgtgcagATCGGTCCTTTGTGGAGG
gctctttgcacttgatctttctggtggaataaaatctgtgattatgtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATCTACTACTACCATGCCCGATCAGACATGTCAGGCTTCATGCAGACATCC
acttgat putative branch site (score: 22)
aataaaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagtttaatttctttgctcttacattttcaacctgtgtccatgttgctctttgcacttgatctttctggtggaataaaatctgtgattatgtgcgtgcagATCGGTCCTTTGTGGAGGTTCCACTGGTATATTCATTTTCTTCTACTGCATCTACTACTACCATGCCCGATCAGACATGTCAGGCTTCATGCAGACATCC
- - - - - - - - - cttacat
- - - - - - - - - - - - - - - - - - gtccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - gcacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctggtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatt