1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATGCGTATTTTCCCAGCATTGCGAGTGACTCTGAGTCTGAGGGAGTCAGATCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttgttccttctcccatatattttgttcgtcttgttgttgcttaggaacagaagagcatcaccctagcatgcgtttttgtattacagaccccaa...
species | Oryza sativa |
transcript | LOC_Os06g51400.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|29614571|gb|CB619584.1|CB619584
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|88438394|gb|CI541138.1|CI541138
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|88838234|gb|CI373594.1|CI373594
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|88850872|gb|CI096262.1|CI096262
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|86433592|gb|CI093935.1|CI093935
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|89193681|gb|CI116314.1|CI116314
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATAEST: gi|11564714|gb|AU165350.1|AU165350
genomic: TCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
EST: CCAATGGAAAAAGGAAGCAGACGCAGGCTGG GTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATN
genomic: CCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttg ... ataattgcagGTGGCTCAGCGAGGAAGGTAGAAAGAAAAGAACACCGGCGAGTCAAAGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGCGTATTTTCCCAGCATTGCGAGTGACTCTGAGTCTGAGGGAGTCAGATCCAAGACGCCAATGGGTGCCAATGGAAAAAGGAAGCAGACGCAGGCTGGgtatgccttgttccttctcccatatattttgttcgtcttgttgttgcttaggaacagaagagcatcaccctagcatgcgtttttgtattacagaccccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttctcc